SE3120218

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10815
  • Fragaria vesca
  • SE3120218
  • Mutator
  • FrvM29
  • LG5:13110226-13110999
  • TATACTCNG
  • TGGGTGCGTCTATTGTTACCCCACAAACCACTTTGCTCACCCCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCAATCAGTA                                         C    -C     T -    ATTGAA  A   ------------------      -CCT    T   ATTAC  C  ------  -----  C  T ------      TACAAATTACAATTTTTTTCTTTTTCTTTTTTATCTTTTTGTTTTGGATGAACACAAATTTTATAACTCTAACTCATATTTATCATATTCGGTCGTGAGTCTGAAGACACAAGCATTTAACCTGAAGATGAGGTAAATTGTTTTGTATTTTTTTTTATGATTCGTCTATCCCTTTACTCATTATTTTCCATATCGACTTTGTATGTAAATTCTCATGGACAACTATATATTGTACCGTATTTATGAACAACGGATA
                          TGGGTGCGTCTATTGTTACCCCACAAACCACTTTGCTCACC CACA  GTTAT G ATTT      AT CCA                  AAATAG    GATA AAA     AG AA      GG     GA AA A      AGTTGT                                                                                                                                                                                                                                                                
                          ||||||||||||||||||||||||||||||||||||||||| ||||  ||||| | ||||      || |||                  ||||||    |||| |||     || ||      ||     || || |      ||||||                                                                                                                                                                                                                                                                 
                          ACCCACGCAGATAACGGTGGGGTGTTTGGTGAAACGAGTGG GTGT  GAGAT G GTGG      GT AAG                  CAGATG    AAGT GGG     TA AT      GG     TT GG T      ATTAAG                                                                                                                                                                                                                                                                
                  TATGACTA                                         A    AA     - T    -----A  -   TATATTAAAATTAACATT      AAAC    -   -----  -  TGTTAT  ATTTT  -  - AAAAGA      ATGAAACAAGTGGTATGTAATAAACAAGTGGAATGTAAGAGAAGTATATATAAAACACTTTAAGTGTAAACGAGTTCCATTCATTTTAGTGGTTCACCAGTTTTTAAGTGAACTTTCATATTTAGGTTTAATTATTGTTCTTTTTTGAGAGTTTAAATTGTTGAGTTACCATAGTCAGCTATAGTTCTACGTGTTACATACATTTATATAGAGATCATCGTTGCAGAAGGTATGAAGATTCAAAGAACTTGACTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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