Plant MITE

SE3120219

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10816
Fragaria vesca
SE3120219
Mutator
FrvM10
LG5:16471934-16472122
TATACTCNG
TTTGAAATTGGGAAGTGAAATCCACACTCCCCAAATTGTAATTCACACTCCCACTTTTC

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNC   G   TT    A                CC                     C     ATTTGT      TAAAATGTTGTCCTTAGTGACTTAAT
                   TTT AAA  GGGA GTGAAATCCACACTCC  AAATTGTAATTCACACTCCCA TTTTC      GGTAAC                          
                   ||| |||  |||| ||||||||||||||||  ||||||||||||||||||||| |||||      ||||||                          T
                   AAA TTT  CCCT CACTTTAGGTGTGAGG  TTTAACATTAAGTGTGAGGGT AAAAG      TAAAAA                          
                 TT   G   --    A                AA                     -     -----A      TCAGTAGTAAATGTATTCTTCTGTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120219

TATACTCNGTCATNCTNNCTTTGAAATTGGGAAGTGAAATCCACACTCCCCAAATTGTAATTCACACTCCCACTTTTCATTTGTGGTAACTAAAATGTTGTCCTTAGTGACTTAATTTTTGTCTTCTTATGTAAATGATGACTAAAAATAGAAAATGGGAGTGTGAATTACAATTTAAGGAGTGTGGATTTCACATCCCTTTGAAATT

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