Plant MITE

SE3130220

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10817
Fragaria vesca
SE3130220
hAT
Frvh17
LG1:17645806-17645993
CAAGTATC
GTATCAACAGTAGTGTTCACTTGGTCAGTAATTAACCAAGAGATTCATGGTCAGTCACCATTGGAT

Secondary structure and sequence

TSD TIR

5'

3'

CAA    CAA                          A                         A      GTAAATA       -     G  --TT    TTA
   GTAT   CAGTAGTGTTCACTTGGTCAGTAATT ACCAAGAGATTCATGGTCAGTCACC TTGGAT       TAAGGGT GGAGA AA    ATTT   
   ||||   |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||       ||||||| ||||| ||    ||||   A
   TATG   GTCATCACAAGTGAACCAGTCATTAA TGGTTCTTTAAGTACCAGTCAGTGG AATCTA       ATTCCCA CTTTT TT    TGAG   
GAC    AAC                          C                         G      --AATAG       A     G  TTGT    TTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130220

CAAGTATCAACAGTAGTGTTCACTTGGTCAGTAATTAACCAAGAGATTCATGGTCAGTCACCATTGGATGTAAATATAAGGGTGGAGAGAATTATTTTTAAGTTGAGTTGTTTTGTTTTCAACCCTTAGATAAATCTAAGGGTGACTGACCATGAATTTCTTGGTCAATTACTGACCAAGTGAACACTACTGCAAGTATCAG

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