SE3130221

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10818
  • Fragaria vesca
  • SE3130221
  • hAT
  • Frvh30
  • LG6:3195585-3196187
  • TAGCTGTA
  • GCTGTAGCCAGTGGCGGATCCAGGAATTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA           T        --   G AT  AAACCG    A ACTTGACTTTCCACCATTAAAAAAAAAAAAAACTACGCTGTGATAGGAGGAATATTATAGATGAAAAAAAAAAATTGACACACCTAGACAGAAGGGGACGAAATGAGCCTTATCTCTCGAAAACAAGTTTATACTCGATTAACTAAATCTAACCCTACGAGTACCTGAAAATTGTTTATCGTAAAGTCATTACTAATAGAATCAGCATATTCCTTCTTAATGTGGAGGACCATGTAATCACATAAAACTCGCCGATACAGG
  GCTGTAGCCAG GGCGGATC  CAG A  TG      GGTG G                                                                                                                                                                                                                                                                     
  ||||||||||| ||||||||  ||| |  ||      |||| |                                                                                                                                                                                                                                                                     T
  CGATGTCGGTC CCGCCTAG  GTC T  AC      CTGA C                                                                                                                                                                                                                                                                     
             C        AT   G AT  -----C    C CTGAGTTCAGCGTGGGTTTGAAAACCTCCCTTTTTTTTAAGAATGTACATCAAATATTACAGTAACATTAGAAAACTCACTCAGGGTGGGTTGACTGGGTTTTCAGAGTTCACATATTAAGAACCCGACTGCAAGTTCGGATTCACTGGTTGAAAATACAGGAAAAAAAGGTTGTTTTTCTCTCTTATCAGAAGTTTTGCATGAAGATAGAAAGAAGAACAGCAGAAGAGGAGGTGACGGGTTCGTCAAACAGCACGTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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