SE3150222

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10819
  • Fragaria vesca
  • SE3150222
  • PIF/harbinger
  • FrvP19
  • LG5:27894166-27894531
  • TAT
  • ACGTTGTGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATT   T        ------AATATAGT     --  ATTTCTATAGAAATTTCAAAATCATAGGAATTACAATTCCATGAATTTAAATTTTCTTAATTGAGAATTTCATTGTTTGGATTTCATGATGTAGAGTTTTAAAATGACAAGAATTTGTATTTAGACCAACCTCAGTTAAGGGAATTGACA
    ACG TGTGTTTG              AATTT  CA                                                                                                                                                      
    ||| ||||||||              |||||  ||                                                                                                                                                       
    TGT ACACAAAC              GAGTC  AA                                                                                                                                                      
  AT   C        CTACTCCTACTTAA     TT  ATTAGTTTTGATTCCTTTAGGGTTAAAGAATACTGATAAAGAGGGCAAACCTAAGAATAGAGCACCTTAATCGTTAAAAGTGCCCTTTTATTAACATTTTAAACTCTCGAATTTAAAGACTGAACTTAAGGAGTGTTTTATACACAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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