Plant MITE

SE3140224

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10821
Fragaria vesca
SE3140224
CACTA
FrvC2
LG6:39191372-39191561
TCT
CACTACCACAATGGCCACACATCTTATGTGAGCAATAGGGGTGTTGCAAT

Secondary structure and sequence

TSD TIR

5'

3'

TCT            ----------             A    A                   CCCATAGAA   C   TA        TTTTCTTTCATTCTT
   CACTACCACAAT          GGCCACACATCTT TGTG GCAATAGGGGTGTTGCAAT         TCT ATA  TGTGGCAA               
   ||||||||||||          ||||||||||||| |||| |||||||||||||||||||         ||| |||  ||||||||                
   GTGATGGTGTTA          CCGGTGTGTAGAA ACAC CGTTATCTCCACAACGTTA         AGG TAT  ACACCGTT               
TCT            TACTTCGTTT             C    C                   --------A   A   TC        TACTCCCATAATCAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3140224

TCTCACTACCACAATGGCCACACATCTTATGTGAGCAATAGGGGTGTTGCAATCCCATAGAATCTCATATATGTGGCAATTTTCTTTCATTCTTCACTAATACCCTCATTTGCCACACTTATAGGAAATTGCAACACCTCTATTGCCCACACAAGATGTGTGGCCTTTGCTTCATATTGTGGTAGTGTCT

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