Plant MITE

SE3130227

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10824
Fragaria vesca
SE3130227
hAT
Frvh31
LG5:17020690-17020885
TATACTCN
GGCTGGTGCTATTAACACACCCTATTTTGTTATTTAC

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCTAACATTT  C                  C      G        AAT    CATACCCCTTTCATAACGTGAGTCAATCATAAAACAATTTCAAGGAG
                          GG TGGTGCTATTAACACACC TATTTT TTATTTAC   TTTA                                               
                          || |||||||||||||||||| |||||| ||||||||   ||||                                               C
                          CC ACTACGATAATTGTGTGG ATAAAA GATAAGTG   TGTG                                               
                  TTTACAAT  C                  T      G        ---    GAGTACACAAAAGGATTATGATGTTTAAACTAACATAAATGTGTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130227

TATACTCNGTCATNCTNCTAACATTTGGCTGGTGCTATTAACACACCCTATTTTGTTATTTACAATTTTACATACCCCTTTCATAACGTGAGTCAATCATAAAACAATTTCAAGGAGCAGTTGTGTAAATACAATCAAATTTGTAGTATTAGGAAAACACATGAGGTGTGTGAATAGGAAAATATGGTGTGTTAATAGCATCACCCTAACATTT

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