SE3120230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10827
  • Fragaria vesca
  • SE3120230
  • Mutator
  • FrvM19
  • LG5:15331657-15332096
  • TTGATGAAT
  • GGGAGTAGTTCTAACGAGGACCACTAAGTTAAGGACTAGTTAAGGACTTCTTCGTTTCATCCATTTTTCGATCGCATATTCACATCTCAACCGTCTAGTTTGTAGATATATATGAGTGATCATCTCTACAAATTTTCATCCAAATTGAAAATCGTTAAG

Secondary structure and sequence

TSD    TIR
5'



3'
TTGATGAATT     TA       C                          A       -  ------      ----               C    A  CA        C   - T     G   ATA         -      C              T C      AAA         A A    TAAA -     TTACCAATTATAAACTTGAACGGCTCTTGT
          GGGAG  GTTCTAA GAGGACCACTAAGTTAAGGACTAGTT AGGACTT CT      TCGTTT    CATCCATTTTTCGAT GCAT TT  CATCTCAA CGT C AGTTT TAG   TATATGAGT GATCAT TCTACAAATTTTCA C AAATTG   ATCGTTAAG C TTCA    T ATGAT                              
          |||||  ||||||| |||||||||||||||||||||||||| ||||||| ||      ||||||    ||||||||||||||| |||| ||  |||||||| ||| | ||||| |||   ||||||||| |||||| |||||||||||||| | ||||||   ||||||||| | ||||    | |||||                              T
          CCCTC  CAAGATT CTCCTGGTGATTCAATTCCTGATCAA TTCTGAA GA      AGCAAA    GTGGGTGAAAAGTTA TGTA AA  GTAGAGTT GCA G TTAAA ATC   ATATATTCA CTAGTG AGATGTTTAAAAGT G TTTAAC   TAGTAATTC C CTAG    C TGATT                              
TTAAGTAGTT     CC       A                          C       A  GTAATT      TAAT               A    A  AG        A   A T     -   CAG         T      A              C T      CAC         - -    ---- T     TAGTTTAGTTACCTGTTAGGTTTAGACAGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End