SE3160232

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10829
  • Fragaria vesca
  • SE3160232
  • Micron
  • FrvMi3
  • LG2:4931342-4931782
  • TATATAT
  • TATATATATAGGCCCTTTTTCAAAATAAGGACTTCCTTACCTTAGTTAAAGTACGGATTTCCTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TA           GC       CA         CT  C             A               ATTT     TAC      -                A     A                 C    CTT        A             C   T        G      -ATA      A   -   --AAA    -T     A    AA  TGTTC
  TATATATATAG  CCTTTTT  AAATAAGGA  TC TTACCTTAGTTAA GTACGGATTTCCTTA    GACCC   TTTTTT ATCATATTTTTTCATC TAGCC TTCAGTATTTAGATATA ATGA   GATTATCT TGCAAATTTTCAG TAA TTGGTAAT GTTAAG    TCGAAA TGT ATT     TTAA  GAACG ACGG  TC     
  |||||||||||  |||||||  |||||||||  || ||||||||||||| |||||||||||||||    |||||   |||||| |||||||||||||||| ||||| ||||||||||||||||| ||||   |||||||| ||||||||||||| ||| |||||||| ||||||    |||||| ||| |||     ||||  ||||| ||||  ||      
  ATATATATATT  GGAAAAG  TTTATTCCT  AG AATGGAATCAATT TATGCCTAAAGGAAT    CTGGG   AAAAAG TAGTGTAAAAGAGTAG ATTGG AAGTTATAAATCTATAT TACT   CTAGTAGA ATGTTTAAAAGTC GTT AACTATTA CAATTC    AGTTTT ACA TAA     AATT  CTTGC TGCC  AG     
             -A       --         AT  A             C               -AAT     --T      C                A     C                 A    CAT        A             A   T        G      GGTG      G   C   ATCTC    TT     A    -A  TCCTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End