SE3160233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10830
  • Fragaria vesca
  • SE3160233
  • Micron
  • FrvMi2
  • LG5:16506695-16507100
  • TATATAC
  • TATATACACA

Secondary structure and sequence

TSD    TIR
5'



3' 
                  CACAC    ACACACACACGGAGGCGTTCTAAAGAGGATGTCCGCACAGTCCTTAAAGTGCGGATGTCTCTCCGTTCGCCACCGTACGGCGCCGGCGAAGGCGCGATTCCACCCCAGCGGACTCCAGCAGCGTCTCCAACCACTTTCCCTCCCCGGCTAATCCGCTGAATTCCAGTTTTCCGGCGAG
        TATATACACA     ACGC                                                                                                                                                                                  
        ||||||||||     ||||                                                                                                                                                                                  A
        ATATATGTGT     AGGC                                                                                                                                                                                  
ATATATAT          ----T    CTAGTCTCCTCCTGCAGACGTGCGAGAATTTCACGCCTGTAAGGAGACAAGCGATGGCATGCCGCGGCCGCTCCCGCACGGAGGTGGGGTCGTCGCAGGGGCTAGTGAAACGGAGGGATCGCTCAGGCGACTTAAGGTCAAAAGGCCGCTCTAGCTAAAACAAACTTCAAAACCCACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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