SE3120235

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10832
  • Fragaria vesca
  • SE3120235
  • Mutator
  • FrvM43
  • LG5:2023788-2024124
  • TACTATCTT
  • AGGGGTCGTCTATGGTACCTACATGTATCTCATACCCTCATTTAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTATCTTA     -TCG   AT               CTC      T  T    AACTAACTGAACAAAATTAC  TTTATTTGAACCAAATTTACAACATTGACAACAAATTTACCACACTTGTTTTACACATTTACATATAACTAAACCAAGTTACTATATCCACAACAATTTG
          AGGGG    TCT  GGTACCTACATGTAT   ATACCC CA TTAC                    CA                                                                                                    
          |||||    |||  |||||||||||||||   |||||| || ||||                    ||                                                                                                    C
          TCCCT    AGA  TTATGGGTGTACATA   TATGGG GT AATG                    CT                                                                                                    
   AATTCTA     TAAA   AT               CAC      T  T    --------------ACTATG  GTTGTTAAAACAACAGTTACTCCATTTAACCCAGTATTGAATCCATTAAATCAAGACAATCACCATTAATGAGTTAGATACTGTAAAATGTTCAAATACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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