SE3160239

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10836
  • Fragaria vesca
  • SE3160239
  • Micron
  • FrvMi1
  • LG6:21880882-21881314
  • TATATAT
  • TATATATATACAGTTCCTATCTAGAGCGTTCGCT

Secondary structure and sequence

TSD    TIR
5'



3'
                C           ----      GAAA               A   A             TTTTCGGTCAT               C        CAC    C       A  AC               C  T              -     TAAA       T   TTTTC  -  TCGTTATTTACACATACAGTTCTGGTTAGACAA
TATATATATACAGTTC TATCTAGAGCG    TTCGCT    AAATTAAAGTGTGAA TTC TTATTTGACTCAT           TTTTCGGTCATATTT CACATCTC   CGTT AGTTTGT GA  CTAATGTATAGATCA TT TGCAAAGTTTCATC AAATT    GATCGTT GGA     GT AA                                 
|||||||||||||||| |||||||||||    ||||||    ||||||||||||||| ||| |||||||||||||           ||||||||||||||| ||||||||   |||| ||||||| ||  ||||||||||||||| || |||||||||||||| |||||    ||||||| |||     || ||                                  
ATATATATATGTCAAG ATAGATCTCGC    AAGTGA    TTTAATTTCACACTT AAG AATAAACTGAGTG           AAAAGCCAGTATAAA GTGTAGAG   GCAA TCAAATA CT  GATTACATATCTAGT AG ACGTTTTAAAGTAG TTTAA    CTAGCAA TCT     CA GG                                 
                A           TTCG      -AAC               C   G             -----------               A        TTA    T       A  AT               A  T              G     -CTA       -   -----  T  CTTAATCTAACTTAGTTACTTCCCTGGTATTTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End