SE3120240

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10837
  • Fragaria vesca
  • SE3120240
  • Mutator
  • FrvM12
  • LG2:10963293-10963738
  • TATACTCNG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
  TATACTCN    - NCTNNCTGTGATTTGGGGTAAGGCTAGGGTGTGTTAATACATGTCATGCATCAACTATGTCATAATGTTGTAAAATGAGTCCCAAAAGTTGTAAAATTAGTCCTCAAAGTTGTAATGTGAGTCCTTAAAGTTGTAAAATTTTAGTTACAACATTATTCCTGATGTGTCGTTAAAGTAGTAATTGAGTCCTTAAAGTTATAACAACTTTTTTTTTATCA
          GTCA T                                                                                                                                                                                                                          
          |||| |                                                                                                                                                                                                                           
          TCCT T                                                                                                                                                                                                                          
AAGTTTAGTG    T TAAGATGTTACTCAGTTACGTACAGTACGTAGTTGAGACAGTATTTCAACATTGTGCTCAGGAGTTTCATCATTATAATCAGGAGTTTCATCATTATAATCAGGAGTTTCAACATTATACTCAGGAATTTCAACATTTTTTACATTAATGTTGTAATCAGGAGTACACAGCAATTTCACCATTTTACACACGAATTTCACTATTAACTCAGAAGTTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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