Plant MITE

SE3120243

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10840
Fragaria vesca
SE3120243
Mutator
FrvM6
LG5:24926738-24926925
TATACTCNG
GAAGGGTGGTGCTATTAACACACCCTATTTTGCTATTAACACACCATTTAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCTTTCAA        G              C TA                  --      -A  --  GAGAACCAATTATCAATCAAATTCAAGTG
                         GAAGGGTG TGCTATTAACACAC C  TTTTGCTATTAACACACC  ATTTAT  TG  GT                             
                         |||||||| |||||||||||||| |  ||||||||||||||||||  ||||||  ||  ||                             G
                         TTTCCCAT ACGATAATTGTGTG G  AAAATGATAATTGTGTGG  TAAATA  AG  TA                             
                   AAGAAC        A              A TA                  AA      AA  AA  GGTGTGTAAAAATAAAATAATGTTTGAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120243

TATACTCNGTCATNCTNNCTTTCAAGAAGGGTGGTGCTATTAACACACCCTATTTTGCTATTAACACACCATTTATATGGTGAGAACCAATTATCAATCAAATTCAAGTGGCAAGTTTGTAATAAAATAAAAATGTGTGGATAAGAAAATAAATAAGGTGTGTTAATAGTAAAAATGAGTGTGTTAATAGCAATACCCTTTCAAGAA

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