SE3120246

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10843
  • Fragaria vesca
  • SE3120246
  • Mutator
  • FrvM44
  • LG3:14622616-14623235
  • TTAAAGTAC
  • GTACGAGAAATTTTATTCACACATCACAACTTGCTAGATACATATCCCAATTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAAA    -----                     A AAC     A   A        A       TTTATAAACTACCTATTTTGCCCCAAATCTAACTATCACCC    GCCTAGTTCATTGTCATCTCATCACAGCAAGCCACTTCATGGAATTATGATGTTAATCATCTTGGTTCACCCATAATCATCTTTTTGACGATTTATGTAATGAATATTATCAAATATAAGAAAATTAGATCAATACTTTTCAAAACTACACAAATTTAAGTTCATCCTATGAAATTAGATCAATATTTTCATTCATGAATTATCCAACTACATGACATGCCCAA
     GTAC     GAGAAATTTTATTCACACATC C   TTGCT GAT CATATCCC ATTTTTT                                         AAAC                                                                                                                                                                                                                                
     ||||     ||||||||||||||||||||| |   ||||| ||| |||||||| |||||||                                         ||||                                                                                                                                                                                                                                T
     CATG     CTCTTTAAAATAAGTGTGTAG G   AATGA TTA GTGTAGGG TAAAAAA                                         CATT                                                                                                                                                                                                                                
         AAATT                     A GCT     G   C        A       -----------------------------------------    TCAAAAAATTTAATGTTAAATAGGAAACTATGTAAAATTTTGTGGTTGTATTAATATTAATGAGAACAGTTTTTTTTTNTTTTTTTTTTTTTTGTATTTGTAAGAGTTTAGTACTCGGGATTTTTAAAGGTAAATAAGGTTAGGGATTTTCGGTACTAGCTAGATACGCGCGCATCACTACTCTAACGTTGTTTGTTTTCACTTAGAGTATCGTATTGGTTATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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