SE3160247

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10844
  • Fragaria vesca
  • SE3160247
  • Micron
  • FrvMi12
  • LG6:34711722-34712115
  • TATAGAT
  • TATAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
      TCC     -  -  ATATATACAAGTCTGTTCAAAGACGGACGTCCACACAGTCCTTAAAATGTGGACATTTCTGATTTCTCCACCTTCAGGCGTCGACGACGGCGCTTCTCTTGCCGGATGAACACTAGAGGCCTCCGGGACGACGTTGTCAAAGAGGTCGGGATTGGAGCTCTGGGTAGCAACCTCA
TATAGA   GGACT TT AT                                                                                                                                                                               
||||||   ||||| || ||                                                                                                                                                                               C
ATGTCT   CAAGT TC GC                                                                                                                                                                               
      TCA     C  C  CTGCAAGCGTGTTGGGAATTTCACGCCAACACAGACAAAAGAGGTGGAAGTCCGCAGCTGATACGGCAAAGAAGAACGGCCTGCTGGCGTGTCTGGAACTATGATTCGAAGGAGAACGGCCACCTGAGCGGCCGATGTTCAAACGTCGGTTGGAACTAGACAGAACTTCAAAAGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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