SE3120248

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10845
  • Fragaria vesca
  • SE3120248
  • Mutator
  • FrvM45
  • unanchored:121742-122411
  • TATACTCNG
  • GAGAAATTCGTCTGAATGGTATACGAACTCTTGCTCCTTATAAACTTAGGTATATCAAGTTTTAAAAATATCAGATTGGTATCTCATGTTTTCATCCCGACCTAAGATTGGTATATATAGCCATTAAGATGACTAATTTACCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTTCTCATAT                       C     C   C  C          A                           T                         C                                          CAGACCCAAAAAA   - GACCAATTTACCCCTAAATTCTCTTTTTTTTAGTTTTTCTTCTTTGTTTTCATATTCCAATTTTCTCTTTTTGCCTTTTTATATTTTTAGGAACATAGAGAAAAATTTATCGTCACTTTCTCCTTGCTAATAATCAGTTCTTCATCTCAATCATCTTTGAATGTCAACGAC
                           GAGAAATTCGTCTGAATGGTATA GAACT TTG TC TTATAAACTT GGTATATCAAGTTTTAAAAATATCAGA TGGTATCTCATGTTTTCATCCCGAC TAAGATTGGTATATATAGCCATTAAGATGACTAATTTACCCT             AGA T                                                                                                                                                                           
                           ||||||||||||||||||||||| ||||| ||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||             ||| |                                                                                                                                                                            
                           CTCTTTAAGCAGGCTTACCATAT CTTGA AAC AG AATATTTGAA CCATATAGTTCAAAATTTTTATGGTCT GCCATAGAGTACAAAGGTAGGGCTG ATTCTAACTATATATATCGGTAATTCTACTGGTTAAATGGGA             ATT A                                                                                                                                                                           
                  TATACTCTT                       T     A   A  A          A                           T                         A                                          -------------   C AGATAAAAAAAGAATTAAAAAAATAAACAAAAGTATAAGGTCTTTATAATTTCTCCAAAACCTTAAACTACTAAACCCAACTGGAAATATTTGAACTTCTTCTAACTTCTCCCCTTTGTATGTCTTCAAGTTAGGAACAACAAAGGCAACTGTGAGTTTCTAGAACAACAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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