SE3150249

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10846
  • Fragaria vesca
  • SE3150249
  • PIF/harbinger
  • FrvP15
  • LG5:12347783-12348204
  • TAT
  • AGAGCATCTCCAACAGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTT                   CTT   ----   -      TTTATCAATTTTAGAGAATATTGGATTGTTTTGTGGTCCAACAGCTTCCCCATCTCATTCCCTAAGATGGGGATGGAGAAGAAAAAGAAGCACTCCTTCCCCAAATTTGCAGCAAAGCCTTCATTCCCCAAATATTTATTATTCACGTGCTCCAACGATAAGAACAAAAATCT
                     AGAGCATCTCCAACAGCTT   TAT    TTT CTTGAT                                                                                                                                                                             
                     |||||||||||||||||||   |||    ||| ||||||                                                                                                                                                                             A
                     TCTCGTAGAGGTTGTCGAA   GGT    AAG GATTTT                                                                                                                                                                             
                   AT                   --A   TTTA   A      ACCCCTTCGTTTTCGGTTTTAGGGATTTTCAAAATACGAGGTTGAGGTTGTCGAAGAGGTAAAACCTATAAAATAGTAAATAATTTTGTTATTTTTTACGATATTCTAATAATTATTATTGTTTTTTTTTATGTATATAAAGTAACATTGTATTTAATGGGTTATTTTATAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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