Plant MITE

SE3130251

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10848
Fragaria vesca
SE3130251
hAT
Frvh34
LG5:9778236-9778725
CATATACA
TATACACAAGGTCTGAAAAATC

Secondary structure and sequence

TSD TIR

5'

3'

CA    CA     T          ---   T   TCGTCGACATTTCGGTGATAATTTCGTTTTTTTCACGTAGCGATATATCCTAACATTCCCAGCTAAAATCGCGCGACATTTTGGATATATCCCGAAATTTCAGGATATCTCGCGATATTTTCGAGATTTTGAAGAATATTCCTCAATTTTCTCCCATACACGTGCTAATGTCTCTCAGTCTCCCACTAGAATTCAATTAAAAAGGAATTGGGC
  TATA  CAAGG CTGAAAAATC   GAA TTA                                                                                                                                                                                                                     
  ||||  ||||| ||||||||||   ||| |||                                                                                                                                                                                                                      
  ATAT  GTTCC GATTTTTTAG   AAA GCC                                                                                                                                                                                                                     
AC    AC     T          CCC   -   CCTTTATAGCTACCAGGCTTTTAACCTATAAAGCTGCCTTTATAGCACCTATATAGCTTTCATACCTTTAATTATATAAATAATACTAGAAGTATAACCATAATACTTGTTATATCTATCATACTCGATACTTATTGAATAGTTTTGTTCAACATCGTGGCTACCAAATTCTCTTCAACATCAAGAACCGGTGGTCCCAAGCTGGGAAGTCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130251

CATATACACAAGGTCTGAAAAATCGAATTTATCGTCGACATTTCGGTGATAATTTCGTTTTTTTCACGTAGCGATATATCCTAACATTCCCAGCTAAAATCGCGCGACATTTTGGATATATCCCGAAATTTCAGGATATCTCGCGATATTTTCGAGATTTTGAAGAATATTCCTCAATTTTCTCCCATACACGTGCTAATGTCTCTCAGTCTCCCACTAGAATTCAATTAAAAAGGAATTGGGCTCCTGAAGGGTCGAACCCTGGTGGCCAAGAACTACAACTTCTCTTAAACCATCGGTGCTACAACTTGTTTTGATAAGTTATTCATAGCTCATACTATCTATATTGTTCATAATACCAATATGAAGATCATAATAAATATATTAATTTCCATACTTTCGATATATCCACGATATTTCCGTCGAAATATCCAATTTTCGGACCATCGATATTTCCCCGAAACCCGATTTTTTAGTCCTTGCATATACA

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