SE3120254

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10851
  • Fragaria vesca
  • SE3120254
  • Mutator
  • FrvM38
  • LG5:23182063-23182526
  • TATACTCNG
  • TAGATTCTAGAAAAAATTTCAGTTTACCCCCCTAATCTTTGGTGGCAAAATCAGTTCAGTCTTGCAATTTTTTTTTAAATCAGTTCGTCCCTTCAACTTTCATAAATACATCAGTTTTGTCCAATTTTTGAATTCCTCTTAAAATATGACGTTACCAAACTGACAAGGGGACCAATTTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNC    T       AA  T             C             G                   C          T                         A               T                               C                G      A       ACAAAAT  CT      CCCTCATTTTTTGCCAAATAAATGTATTTTTTTATATTT
                  TAGA TCTAGAA  AA TTCAGTTTACCCC CTAATCTTTGGTG CAAAATCAGTTCAGTCTTG AATTTTTTTT AAATCAGTTCGTCCCTTCAACTTTC TAAATACATCAGTTT GTCCAATTTTTGAATTCCTCTTAAAATATGA GTTACCAAACTGACAA GGGACC ATTTTTA       GT  AAAATG                                       
                  |||| |||||||  || ||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||       ||  ||||||                                        
                  ATCT AGATCTT  TT AAGTCAAATGGGG GATTAGAAACCAC GTTTTAGTCAAGTCAGGAC TTGAAAAAAA TTTAGTCAAGCGGGGAAGTTGAAAG ATTTGTGTAGTCAAA CAGGTTAAAAACTTAAGGAGAGTTTTATACT CAGTGGTTTGACTGTT CCCTGG TAAAAGT       GG  TTTGAC                                       
                      T       AA  T             A             A                   A          -                         C               T                               A                A      G       -------  --      TTCCCATTTTATCAGTTAAACTCTTCTATAATAATTTCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End