SE3160258

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10855
  • Fragaria vesca
  • SE3160258
  • Micron
  • FrvMi2
  • LG5:617789-618191
  • TATATAT
  • TATATATATATA

Secondary structure and sequence

TSD    TIR
5'



3'
            CACACACGA     A                    G  T         C   CG      CT        A       A                          C                      A       A              G                  C       ------      GT
TATATATATATA         TCGTT TCAGGTGCGGACGTCCGCAC GC CTTAAAGTG GGA  TCCCTC  TTCGCCAC GTACGGC CCGGCGAGGGCGCGCCTCCACCCCAG GGACTCCAGCAGCTTCCCCGAC ACTTTTC TCCCCGGCGAGTCC CCGAATTCCAGTTTTCCG CCAGATT      GACTTT  
||||||||||||         ||||| |||||||||||||||||||| || ||||||||| |||  ||||||  |||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||      ||||||   
ATATATATATAT         GGCAA AGTCTATGCCTGTAGGCGTG CG GAATTTCAC CCT  AGGGAG  AAGCGGTG CATGCCG GGCCGCTCCCGCGCGGAGGTGGGGTC CCTGAGGTTGTTGAAGGGGCTG TGAAAGG AGGGGCCGCTCAGG GGCTTAAGGTCAAAAGGC GGTCTAG      TTGAAG  
            ---ATATCA     -                    G  -         A   AA      AC        G       C                          A                      G       G              G                  C       TGGGTT      TT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End