Plant MITE

SE3120262

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10859
Fragaria vesca
SE3120262
Mutator
FrvM37
LG6:6529542-6529908
TATACTCNG
GGAGCGAATTATACTCACCACGGTG

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCTTTTACATC  A     TT  --A  ---     C            --T       GACCATTGATGTGTAAGTGTTTAAATCGTCGTATGGGAAGATCGAATGAAGACTAGAGACCATAAATTCCTTCTTTTTAATTTCATTTTTGATTTGATCAAATTAACACCCATAATAAGAGTACATATTCT
                           GG GCGAA  AT   CT   CACCA GGTGCACTTGCA   CATTAAT                                                                                                                                   
                           || |||||  ||   ||   ||||| ||||||||||||   |||||||                                                                                                                                    
                           TC CGCTT  TA   GA   GTGGT TCACGTTTATTT   TCTTTGA                                                                                                                                   
                   ATACATTT  -     TT  AAA  TAC     T            GGT       TTATAAGTCATAAAACTAGGCTAGTAGATGCAGCGTGATGTACATATATATGATTATGGCAAATGTTTTAACTTTGGGTTTTCTTTATCAGATTTCACAAAGGTTGATTCTTCCACTCTTGTGATCTAACT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120262

TATACTCNGTCATNCTNCTTTTACATCGGAGCGAATTATACTCACCACGGTGCACTTGCATCATTAATGACCATTGATGTGTAAGTGTTTAAATCGTCGTATGGGAAGATCGAATGAAGACTAGAGACCATAAATTCCTTCTTTTTAATTTCATTTTTGATTTGATCAAATTAACACCCATAATAAGAGTACATATTCTTCAATCTAGTGTTCTCACCTTCTTAGTTGGAAACACTTTAGACTATTTCTTTTGGGTTTCAATTTTGTAAACGGTATTAGTATATATACATGTAGTGCGACGTAGATGATCGGATCAAAATACTGAATATTAGTTTCTTGGTTTATTTGCACTTTGGTGCATAGAAAATTTTTCGCCTTTTACATA

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