Plant MITE

SE3160263

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10860
Fragaria vesca
SE3160263
Micron
FrvMi6
LG5:13951449-13951809
ATATATA
ATATATATATCAGGGCCCTTCCATTGAGGTATCCCTATTTTTGGCCACTTTTAGGGATAGGCCCACACCA

Secondary structure and sequence

TSD TIR

5'

3'

          C     C            T        T      CAC           -   -CC      ----TTA      TCATTTAATGGGGTTGGATGGCTGGGATTAAAACAAAAAGTTACACACTTTATATATATCAAACTTGGACCGTTTAAGATCATTAAAAATAAATCGA
ATATATATAT AGGGC CTTCCATTGAGG ATCCCTAT TTTGGC   TTTTAGGGATA GGC   ACACCA       GATCTG                                                                                                 
|||||||||| ||||| |||||||||||| |||||||| ||||||   ||||||||||| |||   ||||||       ||||||                                                                                                  
TATATATATA TCCCG GAAGGTAACTCC TAGGGATA AAACTG   AAGATCCCTAT CCG   TGTGGT       CTAGTT                                                                                                 
          C     A            C        C      ATA           A   TAA      TGAAAGG      TAAAAACGTAGATGTGGCAAGTTAAGTAACCGAATATACTCATCTAGTAAAGATGTTTAAAAGTCTATTAAATCACTAGCAATTGGGTAAGTTTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3160263

ATATATATATCAGGGCCCTTCCATTGAGGTATCCCTATTTTTGGCCACTTTTAGGGATAGGCCCACACCATTAGATCTGTCATTTAATGGGGTTGGATGGCTGGGATTAAAACAAAAAGTTACACACTTTATATATATCAAACTTGGACCGTTTAAGATCATTAAAAATAAATCGAAGTTTTGAATGGGTTAACGATCACTAAATTATCTGAAAATTTGTAGAAATGATCTACTCATATAAGCCAATGAATTGAACGGTGTAGATGCAAAAATTTGATCGGAAAGTTGGTGTAATGCCATATCCCTAGAAATAGTCAAACATAGGGATCCCTCAATGGAAGAGCCCTCATATATATAT

Copy Cancel