SE3120264

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10861
  • Fragaria vesca
  • SE3120264
  • Mutator
  • FrvM12
  • LG6:21891295-21891721
  • TACTAAAAA
  • GGATAAAGCTATGGTGTGTTGATGCATGTCATGCATCAACTTGGTCCTAAAGTTGTAAAATGAGTCCTCAAGGTAGTAATATTAACCCTCAAAGTTGTAATTGAGTCCTTAAAGTTGTAAAAACTCATATTTACAACATTAGTCATCTAAGTGGTAAAATGTGTCCTTAAAGTGATAATTGAGTCCTCAATGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACTAAAAATT   T  AG             A                                       GA   CTC                C CT                                                       ATC                  C        A     G         T  TGCATCAACT
           GGA AA  CTATGGTGTGTTG TGCATGTCATGCATCAACTTGGTCCTAAAGTTGTAAAAT  GTC   AAGGTAGTAATATTAA C  CAAAGTTGTAATTGAGTCCTTAAAGTTGTAAAAACTCATATTTACAACATTAGTC   TAAGTGGTAAAATGTGTC TTAAAGTG TAATT AGTCCTCAA GT          
           ||| ||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||   |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||||| ||||| ||||||||| ||          T
           CCT TT  GATGTTGCACAAT ACGTACAGTACGTAGTTGAACCAGGATTTCAACATTTTA  CAG   TTTCATCATTATAATT G  GTTTCAACATTAACTCAGGAATTTCAACATTTTTGAGTATAAATGTTGTAATCAG   ATTCACCATTTTACACAG AATTTCAC ATTAA TCAGGAGTT CA          
 ATTAAAAATC   T  AA             A                                       AC   CAA                A AT                                                       AAA                  C        C     A         T  CTATTTTCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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