SE3130265

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10862
  • Fragaria vesca
  • SE3130265
  • hAT
  • Frvh35
  • LG2:21366972-21367635
  • CTTCATCC
  • TAGGGATGGCAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTCATCC             --             TATGGGGATCAAAATACCGTACCCATACCCTTTTATATTTCTCATCCCCGTACCCGTCCCCGTACCCGTAATTAGATAATGGGGATTCCCCGTACCCGTATCCTTTGGGGATTACATTTCCATACCCGTACCCGTATCCGTTAACAATTATGTATTAAATTAATTTTAAAAAAAAAATGAAATACAATTATATAAAAGTATGAAATTAAAATCAAATACCAAAATAAATAAGTTTCATTCCAATAAAAATAAATACAAGTCTTGGTTAAAACAGAACAATACTAGTAAATTTCATTA
        TAGGGATGGCAAT  GGGTAGGGTAGGG                                                                                                                                                                                                                                                                                                         
        |||||||||||||  |||||||||||||                                                                                                                                                                                                                                                                                                          
        ATCCCTACCGTTA  AGGGGTCGCCCAT                                                                                                                                                                                                                                                                                                         
CCTACTTC             TT             CCCATGGGTGCCCATAAGCTGGGATTGCCCCTTCTATATGCCCATATTTGCCCATTGCCCCTACCCCTAAGGGTCATAAGTCTAAGAATTTAGCCCATGCCCCGCCCATACCATAAAACTATAAGCAGGGGTAGGGGTGGGTAATTTCTACTTTTATTATAATATATATTAATATATTAAATAATAATATATATATAAATATATATTAAATATTTATTTATAAATACATTTTTTTAAACACTGAGAGAATTATTTGTAAATTACCTGGAAGGAAAAATAATATATAATAATAAGAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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