SE3150266

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10863
  • Fragaria vesca
  • SE3150266
  • PIF/harbinger
  • FrvP22
  • LG5:15324242-15324523
  • TAT
  • AGAGCATCTCTAGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTA               ATAGAG         T -   AAAATTGTCAACATTTAGATTTAAAATAGCAATTTTTGAACTTTTGCTCCAGCAGTATTGCTAAATTATATACATTAGTTAAGTTTTAGTTAATTGTCTCCCAAAG
                     AGAGCATCTCTAGCA      TTAAATTTA T GTT                                                                                                          
                     |||||||||||||||      ||||||||| | |||                                                                                                           
                     TCTCGTAGAGATCGT      TAACTATTT A ATT                                                                                                          
                   AA               ----CG         - A   TTTTTAATCTCTAAATAGTTAAAAATTTACTTAGAAACGAGGTCGTCATATGAATTCTTCAACTATTTAAATCTTTAACTATCTCTTTTAACTATTTAAATAGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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