SE3120269

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10866
  • Fragaria vesca
  • SE3120269
  • Mutator
  • FrvM15
  • LG4:526954-527361
  • TATTATTTG
  • GGATTAATTTCAGTTTACCCTCCTAAGGTTTGGATTTAACATTATTTCACTCTCCATACTTTTCATTTTGAAAATTTACTCTTTAAAGTTTCCAATTTTCATTAATCAGACCCAATTGCTAAAATTCGGTTCAATTGGGAGGTTAAATGCTAGCATGAAATCTTTGAAAAAATGTTC

Secondary structure and sequence

TSD    TIR
5'



3'
TATTATTTGTT       T              CTA        AT                  C         C          -                  ---   -      TT     GA          A      G   C    G   G     --A  -  AG     AA  T      -----     T  TAAAA      TT
           GGATTAA TTCAGTTTACCCTC   AGGTTTGG  TTAACATTATTTCACTCT CATACTTTT ATTTTGAAAA TTTACTCTTTAAAGTTTC   CAA TTTTCA  AATCA  CCCAATTGCT AAATTC GTT AATT GGA GTTAA   TG CT  CATGA  TC TTGAAA     AAATG TC     GGCGAT  
           ||||||| ||||||||||||||   ||||||||  |||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||   ||| ||||||  |||||  |||||||||| |||||| ||| |||| ||| |||||   || ||  |||||  || ||||||     ||||| ||     ||||||   
           CCTAATT AAGTTAAATGGGGG   TCCAAATT  AATTGTAGTAAAGTGAGG GTATGAGAA TAAAACTTTT AAATGAGGGATTTCAAAG   GTT AAAAGT  TTAGT  GGGTTAACGA TTTAAG CAA TTAA TCT CAATT   AC GA  GTATT  AG GATTTT     TTTAT AG     TTGTTG  
  TTGTTTATT       T              TAC        CC                  T         T          T                  TTT   T      TT     AC          C      A   A    G   G     AAA  T  -A     -G  T      GTGAT     C  -TATA      TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End