SE3130271

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10868
  • Fragaria vesca
  • SE3130271
  • hAT
  • Frvh12
  • LG4:288574-289314
  • ATGCTAGC
  • GCTAGCTAGGCCTCATCATTTGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
AT      --             TT    --  ------  -       ACCAGCCCTACCCTATAGGGCCGAAGCCCTACTCAGCCTTAGCCCTTTTCAATTAGGGTAGGGCAAAGGTCAAGCAAATGAAACCCGGCCCTACCCTATTGAGCCCTTTAGGGCCAAGCCCAGCCCGGCCCTAAAAGCCCGCCCTTTAGGCCCTAATAATAACTTATTTTCTATTGTTTTTAATATGTTTCTTATTTTTTATACAATACAACTAATCTTGTAAGTTTTATTTCTTTAATTTGTATTTTTCTTTGTTAAATAACGATAGATTTTTGGTGATTTAGAGAGATAGTTAATGAAATATATGAATATAACTACTTCGATTAAT
  GCTAGC  TAGGCCTCATCAT  GGCC  CT      TC GGTCCTA                                                                                                                                                                                                                                                                                                                                        
  ||||||  |||||||||||||  ||||  ||      || |||||||                                                                                                                                                                                                                                                                                                                                        A
  CGATCG  ATCCGGAGTAGTA  CCGG  CG      GC GGGATGG                                                                                                                                                                                                                                                                                                                                        
        TA             -C    CC  ATCCCT  C       GATTTAAAATCCCGAATCCCATCCCAGCCCATCCCGAAACTGAACCAGTTGTTATAAATCCCGACCCATCCCAGCCCAGCCCCGAGTTTATACGTTCGGGAACGGGCGGGAATTTCGGGTAAAGTCCCGATTATCCCGGCCGGGAAACTTATCCCGATTTATCCCGGCTTTCCCGACTTATACTGCAATAAAACAAATTGCTTTATTTAAGTACTCAAAATTAAAAAAAGGAGTTTATAATGGAGTTCCCTATATACACTATGTTCTGGGATAAAAATCAGTATAAATTGTATGTATATGTAATATAAATTGAATTCTGTAGATCTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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