SE3130273

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10870
  • Fragaria vesca
  • SE3130273
  • hAT
  • Frvh36
  • LG5:19633417-19633896
  • CTTTGAGA
  • CTTTGAGACAGTGGCGTAGC

Secondary structure and sequence

TSD    TIR
5'



3'
    T   A            CAGAAAT      --A  -    --     --A    GG   AGCTTACGTAGGAAGAAATTTTTTGTTATCTCTGGAGTTCATCGAATAATAAACAAGTCGAGCCGAGAAGACACTAGAGATAATATATGTGTATGAGATAAACCATTCAAAATAAGAAGAGAAAACAAACGAGAGAAAATAAATAAAATAAAAAAAACAAATAAACACATTGTTTTGCTTTTTTTT
 CTT GAG CAGTGGCGTAGC       TATATG   AG AGGG  GTCAA   CTTT  ACG                                                                                                                                                                                          
 ||| ||| ||||||||||||       ||||||   || ||||  |||||   ||||  |||                                                                                                                                                                                           
 GAG TTC GTCACTGTATCG       ATGTAC   TC TCCC  CAGTT   TGGT  AAG                                                                                                                                                                                          
A   T   -            -------      CAC  A    TT     AAC    --   AGTTGTAGAAAGGTGTAGGTAACAAAAGTCTAAAAATGAATGTAGATTCTCAATATATTCGATGAATTAAATGAGAAAATGAGTAAAACGGGGAAGTTTACACTATTGTTTATATGAAGGAAAATTGAAAATTGGTAAAGTACTCTAGTTTCGTTTTGCTACAAAAACTGGTCTTTTTTTTTCTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End