SE3120276

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10873
  • Fragaria vesca
  • SE3120276
  • Mutator
  • FrvM51
  • LG6:2389697-2390111
  • TATAATTTA
  • GGAGTAAATACTTGTGACACCCTGTAGTTTACACCTAAAATCAGTTTTGTCCCTCACTTTTTTTTTAAAACTGGTATACCCCTATACTTTGAATTCTCGACTGATTTGCCCTTTTCCCAGCTGATTATGACTGTGACATGCTTATTAACAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAATTTATT         A                                                                                                    C     C      A                            CTAAATAACCCTTCA    ------   CT  TCTAGCATAGTAATAGGGGGCTTAG
           GGAGTAAAT CTTGTGACACCCTGTAGTTTACACCTAAAATCAGTTTTGTCCCTCACTTTTTTTTTAAAACTGGTATACCCCTATACTTTGAATTCTCGACTGATTTGCC TTTTC CAGCTG TTATGACTGTGACATGCTTATTAACAGT               CTCT      TAT  CT                         
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||               ||||      |||  ||                          
           CCTCATTTA GAACACTGTGGGACATCAAATGTGGATTTTAGTCAAAACAGGGAGTGAAAAAAAAATTTTGACCATATGGGGATATGAAACTTAAGAGCTGACTAAATGG AAAAG GTCGAC AATACTGACACTGTACGAGTAATTGTTA               CGAA      CGA  AG                         
  TTATTTAAT         C                                                                                                    A     A      C                            ---------------    CACTCT   --  TTACCAACCCAAAACTCTCGTTCCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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