SE3130278

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10875
  • Fragaria vesca
  • SE3130278
  • hAT
  • Frvh6
  • LG6:17475720-17475920
  • TGAATCAC
  • TGAATCACCAGTAGTGTTCACATGATCACCTAACGACCAAAGAAATCATGGTCAATCACTGTTAGATATAAATCCAAGGATGAGAAATATTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
    A    C   A           A       A    C  A               C      A          --C    A         TT  TTTAAAG
 TGA TCAC AGT GTGTTCACATG TCACCTA CGAC AA GAAATCATGGTCAAT ACTGTT GATATAAATC   AAGG TGAGAAATA  AT       
 ||| |||| ||| ||||||||||| ||||||| |||| || ||||||||||||||| |||||| ||||||||||   |||| |||||||||  ||        
 ACT AGTG TCA CACAAGTGTAT AGTGGAT GCTG TT TTTTAGTACCAGTTA TGGCAA CTATATTTAG   TTCC ACTTTTTGT  TG       
C   A    -   C           C       C    A  C               A      A          ATT    -         TT  TTGAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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