SE3130280

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10877
  • Fragaria vesca
  • SE3130280
  • hAT
  • Frvh38
  • LG6:4138098-4138757
  • GTGTGTAT
  • TATCAGTGGCGTAGCTAGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTGTG                 G  ---A    - TACAAGAAGGTCAAATTTTAGATAACTTTTCATATACCGTATAAAATTCTAGATAATGGTTTCTTAGGCATAATAGTCATTCTAGAGCTATTATTGGGAAGGAATTTGAAAAAATTTCAACAACAAAGAAAACAGGGCTTGAGATTTATAGTAGATTTGAACCCATGTATAACTTAGTCCCATAATCTTAATTTATTTCGCATGGGTAGTAACAATTTTAGCTAATGCTAAATTATGGGAAATGCCGAAATGGAATAGAGACGAAGGCTGACATGCGACGACGATGTACGTAGTCTT
     TATCAGTGGCGTAGCTA AA    CTTT T                                                                                                                                                                                                                                                                                                         
     ||||||||||||||||| ||    |||| |                                                                                                                                                                                                                                                                                                          
     GTGGTCACCGCATCGGT TT    CGGT T                                                                                                                                                                                                                                                                                                         
TATGT                 G  ATGC    T CCCCAGTTAACTGGGAAGAGTTAAAAAATGGTACAAAAAGTAACCAACTTAAAAAATGTAGAATAATATGTATAATAGTATTGTGATGTATAAACTGGGGATACTGTGTTTCTGTTTCTATCTTTATATTCGGATAGATATAAATAAAAGAATTTTGTGACCTGAGTTTTTATTATCTACAGAAAACGGTTTGTGAATGTTTAGATGGATTTTCCGATTTGGGATAGTACATAAATAAAAGAAAAGAAGTAAAAATAAAAGTTGATAGAAAAAGAATAAAAAGACAGAATTATAAGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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