SE3150281

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10878
  • Fragaria vesca
  • SE3150281
  • PIF/harbinger
  • FrvP8
  • LG3:26435664-26436116
  • TAT
  • AGAGCAAATGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTC                ATGACTATTTGCATGGGTTGGACTGAGAGGTTGGACCAAAAACTGTATCCAGCAGCAACAAATTGGACTGGGTTGATGTTGGGCCCCATGCAGGACCCACCATGATAGATTGTGGTCTGGGTTAAGAATTAATTGACTCATCTCTCAGTCCATGACCAATTTCTCCACGAGGCCCACGTGAAACCAAATTGCACATGGAGAGTGGACA
                    AGAGCAAATGCAGCAG                                                                                                                                                                                                                
                    ||||||||||||||||                                                                                                                                                                                                                T
                    TCTCGTTTACGTGGGT                                                                                                                                                                                                                
                  AC                AAAACCCACCCAAACTGGTTAAAAATTGGGCATAATTATATGATAAGTAGGTTTAGTCAGAAATCAGGAAACAAGCTGTTATGTTGTTATTCTAGCTAGTATTCTGGTTAATGATAAGTGTAAAATATACCTGTCAGTCTAGAACTAGTCTTGCCGGGTATAATTTCTCAGTAAACCTTTAAACCAAATTTATCTATCGGGGTACACG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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