Plant MITE

SE3130282

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10879
Fragaria vesca
SE3130282
hAT
Frvh17
LG1:7126546-7126748
TAAACGGA
CGGATGCAGTAATGTTCACCTAATCAGTAATTGACTAAGAGATTCATGATCAGCACCGTTAGATTTACATCTAAGGGT

Secondary structure and sequence

TSD TIR

5'

3'

TAAA  GA       A         AA           C             A    -       A   T  C          TAAAAATAAAACAACTCAA
    CG  TGCAGTA TGTTCACCT  TCAGTAATTGA TAAGAGATTCATG TCAG CACCGTT GAT TA ATCTAAGGGT                   
    ||  ||||||| |||||||||  ||||||||||| ||||||||||||| |||| ||||||| ||| || ||||||||||                    
    GC  ATGTCAT ACAAGTGGA  AGTCATTAACT ATTCTCTAAGTAT AGTC GTGGCAA CTA AT TAGATTCTCA                   
GTAG  AA       C         CC           A             C    A       C   C  T          CCTCTCTAAATAAAAATTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130282

TAAACGGATGCAGTAATGTTCACCTAATCAGTAATTGACTAAGAGATTCATGATCAGCACCGTTAGATTTACATCTAAGGGTTAAAAATAAAACAACTCAACTTAAAAATAAATCTCTCCACTCTTAGATTTACATCCAACGGTGACTGACTATGAATCTCTTAATCAATTACTGACCAGGTGAACACTACTGTAAACGGATG

Copy Cancel