SE3150286

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10883
  • Fragaria vesca
  • SE3150286
  • PIF/harbinger
  • FrvP24
  • LG4:1757999-1758594
  • TAT
  • AGGGCATCTCCAACAACAGTTGCTATACCCAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATA                CAG  GC             ATACTCATAACCCATAAAAACTCATCTTTAACAATAAAAACTCATACCTAATTATGGGTTCCTACCAGACTCACGGCCCAAAATGGGTCAAGTCGTAGGGAGGAAACCCATTTGTGGGTGACGCGGGACCCAGAAGGCAGCAGCTGCATGTGAAGAGTCTGCAACAGCAGGAGCCACGCGCCAGTCATCCCACCTGCAGCAGAAGCGCGCAAAAAGACAAAAAAACTGACAGAAAAGAGAGACGCGCGAACAACGCGTTG
    AGGGCATCTCCAACAA   TT  TATACCCATACCT                                                                                                                                                                                                                                                                    
    ||||||||||||||||   ||  |||||||||||||                                                                                                                                                                                                                                                                     
    TCCCGTAGAGGTTGTT   AA  ATATGGGTATGAG                                                                                                                                                                                                                                                                    
  AA                AGG  AA             CATGGATATAAAACTCAGTGGATTTGGATAATGATAAGTTTGTATATAAGGTAGAGGTTGGTAATATAGTTTTGAGTATAAGTATGGGTTTAAAATTAGTAAATTTTTGTTATGAAAGTCGGAGTAAAAAAGAAAAAGGTCGACTTAAATAGACCTGGAAAGTAAAACTTACTTTCCGTTTAGACCCGGTGTGTAAAATACTGACAACCTCCTGGTAACCGCTCGAGTGCACTTTGGTGGGTGTGGTTAGGTCGAGAGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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