Plant MITE

SE3120287

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10884
Fragaria vesca
SE3120287
Mutator
FrvM53
LG6:20037206-20037892
TATACTCNG
AAGAGAAATTTTATTCACACATGCCTATACACTTAATACACACCCCATATTTT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCTTACAAA               C       C   TAC   TA        CC A      ----------------------           -  A   -      TC   C        CCTCATTATACATATTAAGCCCCAACAAATCTGTATAAAATGAATTTTAGCGAGAACGCAAATTTGTACAAAATGAGCACCTTCTTCTTCTCCAATATATATTAAGTCTCAACAAAACATGATCAATGAACAATAGATATTAATGAACTAATATATCAAGAAGACCTCTTTTATACTTTAATTCTTTGATTTCTCTATACTTCATATAACGCGAGAGATAGAGAACAAAATTTTTA
                         AAGAGAAATTTTATT ACACATG CTA   ACT  ATACACAC  C TATTTT                      ATTTTGTGCAA AT TTT TCTTAA  TTC TTTTATAC                                                                                                                                                                                                                                            
                         ||||||||||||||| ||||||| |||   |||  ||||||||  | ||||||                      ||||||||||| || ||| ||||||  ||| ||||||||                                                                                                                                                                                                                                            T
                         TTCTCTTTAAAATAA TGTGTAC GAT   TGA  TATGTGTG  G ATAAAA                      AATGGGAACTA AC TCT TCGACT  TTA ATTTGATT                                                                                                                                                                                                                                            
                  AAAAACA               T       C   TAA   TC        TA A      ACTTTGAAAAAATTTATGATTA           A  -   T      --   -        TATTTATAATATGACCTCAGATTTGTCGTCTTGTTATAAGGTATTATAAAAAATAGTTAAACAATTAAGGTTAAGCAAAATAGTTAGTAAGTATTTTACTTTGGTAGAGTAGGTAGTTAAACATCGTCTAATACTATAATCACTATTAAACACAAACCTCAGTACTGGCTCGATCGAAACTTAAACCCCATTACCGCTCCATCTCAACCACTTTCTACTTTTTTCGTGGTTTCAGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120287

TATACTCNGTCATNCTNCTTACAAAAAGAGAAATTTTATTCACACATGCCTATACACTTAATACACACCCCATATTTTATTTTGTGCAAATATTTTCTTAATCTTCCTTTTATACCCTCATTATACATATTAAGCCCCAACAAATCTGTATAAAATGAATTTTAGCGAGAACGCAAATTTGTACAAAATGAGCACCTTCTTCTTCTCCAATATATATTAAGTCTCAACAAAACATGATCAATGAACAATAGATATTAATGAACTAATATATCAAGAAGACCTCTTTTATACTTTAATTCTTTGATTTCTCTATACTTCATATAACGCGAGAGATAGAGAACAAAATTTTTATTGACTTTGGTGCTTTTTTCATCTTTCACCAACTCTACCTCGCCATTACCCCAAATTCAAAGCTAGCTCGGTCATGACTCCAAACACAAATTATCACTAATATCATAATCTGCTACAAATTGATGGATGAGATGGTTTCATTTTATGAATGATTGATAAAACGAATTGGAATTAACAAATTGATAAAAAATATTATGGAATATTGTTCTGCTGTTTAGACTCCAGTATAATATTTATTTAGTTTAATTTCAGCTTTCTCAAATCAAGGGTAAATTAGTATTTAAAAAAGTTTCAAAAATAAGATGTGTGTATCTAGTAATTAGCCATGTGTTAATAAAATTTCTCTTACAAAAA

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