SE3130292

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10889
  • Fragaria vesca
  • SE3130292
  • hAT
  • Frvh13
  • unanchored:8646556-8647178
  • GTTGAGTG
  • CTATGTTGCACGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTGAGTG               --------C     - TGTAGTGGAGTGTCTCAGACACTCTGACACGCTGACATGGCGTCTGACACGGCAAAATATGTGTCCGACACGTCACGTGACGTGTCGGAAAATGTTTATTTTTCCAACACGTTGACCGACTCGCCACATCATCTCCGACATGCCACATCATCATTTATCAATTTTTTTAATTGAAAAAAAAAAGAAAAAAAAAGAGAAAAGAGTACCAAAACCTAAATAAAGCTACTGTCCATTTTTGAAAACAAGCTACTGCTCAGTTTTGTCAGCAACCTACTGC
        CTATGTTGCACGGAC         CTCCA T                                                                                                                                                                                                                                                                                     
        |||||||||||||||         ||||| |                                                                                                                                                                                                                                                                                      
        GATACAACGTGCCTG         CTGTG C                                                                                                                                                                                                                                                                                     
GTGAGTTG               TGCCTGTGC     T TGTGGCGATGTGCTGTGCGGCTGTGCCGTTTTGAGTCTTTGACTTATAGGCTGTGCCAAACCTGTGCCGTTTATTTTAATATATAAATAATAATTTATATGATTTTATATTTTATTCAAGTATATAATGGTTTTATTACAAAATTTAAGTTAAGTAACGTATTGGTCTTCTTTATTGTAATTTCTCTCAGTTTACGTTTACTATTTTCACGTATTAATTATTATAATCTTCATCGTCTGGAGATTGAATTTTATATTGTAATTTTTTTTAGTTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3