SE3150296

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10893
  • Fragaria vesca
  • SE3150296
  • PIF/harbinger
  • FrvP25
  • LG2:13932134-13932508
  • TAT
  • AGAGCATCTCCAAGCCTTGGTCTAAAACCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATT  A          GCC          A    TAAT   ----- TTA      GTAAAATCTCATCTCCAACCTACTACCCAAGTTGAGCTAAAATAAGATTTACCTAACATGTGTCCTCCTCTTTTGATTCAACCAAATAGGACCAAACCTATAATTTATGAGGGTGAGTGGGTGTGGGCCACTGTCAG
    AG GCATCTCCAA   TTGGTCTAAA CCTA    AGG     T   AGATTT                                                                                                                                         
    || ||||||||||   |||||||||| ||||    |||     |   ||||||                                                                                                                                         A
    TC CGTAGAGGTT   AACCAGATTT GGAT    TGG     A   GTTTAA                                                                                                                                         
  AT  C          GTT          A    ---T   ATATA ---      AATCCAGTGGATTTGGATATTATAAGTACATCCAAAAACGTAGAGGTTGGGTACCTCTGTTTTGGGTTTGTATAAATTAGTAAAATATAGTAGTAAATTAGTATGTATTTCACTTTGAATTAACAAATTATTATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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