SE3150297

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10894
  • Fragaria vesca
  • SE3150297
  • PIF/harbinger
  • FrvP12
  • LG6:21089915-21090240
  • TAT
  • AGGCCTAGTTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTA   C         TACA   TCGCT             AAAATAAATAAATAAATTA    -     TTAACTTCTAGATTTTATTGTGTTTGGTAAATTAAAGAAAAACAACTTTTTCTAAAAATTACAGGTAAGTGGAAGCATATTTTAGAAGCAGCATTGAGGT
                    AGG CTAGTTTGG    GCT     TTTTTTATAAAAA                   GTTT TTATC                                                                                                    
                    ||| |||||||||    |||     |||||||||||||                   |||| |||||                                                                                                    T
                    TCC GATCAAACC    CGA     GAAAAATATTTTT                   CGAC TGATA                                                                                                    
                  AA   C         CTAA   -CACT             -----------AACAAATA    A     CTTATATTAGTCGACACTTAATTTTGTCAAAATACAAACCACAACAGTTCTGTATTTTATAATAAAAAGTCACAAAAATAGCTGTTGTTGAAGATTTTCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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