SE3130298

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10895
  • Fragaria vesca
  • SE3130298
  • hAT
  • Frvh5
  • LG6:6786142-6786787
  • TATGTATG
  • TATGTATGTAGACCTGTAAATGGACCGGATCT

Secondary structure and sequence

TSD    TIR
5'



3' 
                                ----T  TCCGGACCCGCTCCGGATCCGTGGTTTTTAAACGGGTTTAGATCAAAAATTAGACCCGTTGATCCGTTAAGGACCCGGATCCGTTTTAAAATAATTAAATAATATTTTTATAAATATAATATTATTGATAAATATTCAATAATATAATAATTATTTGGATAACCTAAACGTCTAAATTACATCTAAAGTATGATCATTTGATGAAGTTGAAGATTACTTATGCGTATATTTTTTTTATTCTCTTTGCTAATAAATACATTGGAGGTCTAGTATTTTGAATATATTA
TATGTATGTAGACCTGTAAATGGACCGGATCT     GA                                                                                                                                                                                                                                                                                              
||||||||||||||||||||||||||||||||     ||                                                                                                                                                                                                                                                                                               
GTATGTATATCTGGACATTTACCTGGCCTAGA     CC                                                                                                                                                                                                                                                                                              
                                CCTCG  TAGCTGGATCTAGGCCTAGGCCTAGGCATTATCTTTAAAACCTAGGCCTAAGCTGGGCAATGGACAGCCTAGAAACTATCGATCTAAGTTTAGGCCTAGGTCGCCCAATTGCCTATGGGCTGGGCAATTAGGCTAGGCAAATATTATTATTTATAAAAGTTTAAAATTTATTATTAAAAAATTAAAATAGTATTTAAAAATATTTTGTGATTACTTTATAATATTGTTTTATTTCCAAATGTAATTTTTAACTTAATGTACCGGTTTTATGAAGAATTGTTATTTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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