SE3130300

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10897
  • Fragaria vesca
  • SE3130300
  • hAT
  • Frvh13
  • LG7:6942112-6942716
  • GTAAACAT
  • ATCTATGTTCCACGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTAAAC         C      CACGAACA  GACACGGACACGGTGACATGACACGTCACGACATGCCGACAAGGTAAAACTCAAAAAACTGAATATCAGACACGGTTTGGACACGGCAAATAATATATTTTTATGTGTTTCTAATAAATAAAAATATACTAAAATATGAAATAAGTTCATTACATTATCAAAATACTGTTCTAAATTAAATTAATTGTATAATCATAAAAAATAACATTAAAGAAAGTCAAATACAAATAATAGAAGTGCATAATTAACAATATTAGAAGCAACATACCTCTAA
      ATCTATGTT CACGGA        CG                                                                                                                                                                                                                                                                                  
      ||||||||| ||||||        ||                                                                                                                                                                                                                                                                                  C
      TGGATACAA GTGCCT        CA                                                                                                                                                                                                                                                                                  
TACAAA         C      --------  CAGCCTCACAGCTTCACAGCCTGTGTGGGCTGTATGGCTGTGTGCAGGCTATGCCATTTTAAGCATTACAACTGAAAAGACTGTGCAATTGGCTGAACAATGCAGTAGAAATTGTGCAGTGTAGTAATAAATAGTTAAAAAAATTAATTTTTTTATTTTTATTTTTTCCTTGGTTTTGGATTTATTTCGATGTCAGGTAAAAACTTTTGTTCGATGACAGATCAAAACAGTCGTTGGATGACGTTTAAACTAAAAGAAATTACAATACAAAATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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