SE3120302

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10899
  • Fragaria vesca
  • SE3120302
  • Mutator
  • FrvM12
  • LG2:5502911-5503352
  • TAATATAGC
  • GCATGGGTAAGGCTAGGGTATGTTAATGCATATGATG

Secondary structure and sequence

TSD    TIR
5'



3'
TAATATA  ---     T  GG   G   A           ----      CATCA        CT AAGTA     A      A     G         GAA  C  AA                              AAAAA                  T    T   CC     GTGGTAATTGAGTCCTCAAAGTTGTAATATAAGTCCAATTTGTAACAACTTTT
       GC   ATGGG AA  CTA GGT TGTTAATGCAT    ATGATG     GGTTTGTC  C     GTAAA TGAGTC TCAAA TAGTAATAT   TC TT  AGTTGTAATATGAGTCCTTAAAGTTGTAAA     TTAGTTACAATATTAGTC TCAT TGT  TTAAA                                                     
       ||   ||||| ||  ||| ||| |||||||||||    ||||||     ||||||||  |     ||||| |||||| ||||| |||||||||   || ||  ||||||||||||||||||||||||||||||     |||||||||||||||||| |||| |||  |||||                                                      
       CG   TACCT TT  GAT TTA ACAATTATGTA    TACTAC     CTAAATAG  G     CATTT ACTCAG AGTTT ATCATTATA   AG AG  TCAACATTATACTCAGGAATTTCAACATTT     AATCAATGTTGTAATCAG AGTA ACA  AAAAT                                                     
     TA  ATA     T  AA   A   C           CACT      ----A        TT --AAA     A      G     G         ATC  T  CC                              AAAAA                  T    C   --     TTCATCATTTTACACACAAATTTCACCATTGACTCAGGAGTTTCACTTAATTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End