SE3130305

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10902
  • Fragaria vesca
  • SE3130305
  • hAT
  • Frvh29
  • LG6:35772225-35772710
  • ATTAGAAA
  • CAGGCCCGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTAGAAA          --------   - -    TTTGAGGCCTGAGTCAAACTTCCAGAGTTGGGCCCCTAATTTTTTTTTATATATAAAATAGCATATAACATCCAAAAATATATAGGATTTTTATGCAAAATACTTATTATGCAAATAAGATTCCAAAACCTTGATGGTTTAGTAATCCTAATTATATTATAAATCCTATCTATACAACAATATCTTACCTAATCGTGTTTGGCTGCTTCTAT
        CAGGCCCGGA        CCT G AGAT                                                                                                                                                                                                                    
        ||||||||||        ||| | ||||                                                                                                                                                                                                                     
        GTCCGGGCCT        CTC G GTTC                                                                                                                                                                                                                    
AAAGATTA          AAACTTAT   C T    TCCGAACCCTGAGTCCCGGGTTTTTAAACTTCCCGGGTTTTTATAATCAACAGAATTTTTTTTTTTTAATTATCAAAAAACTGATACGTTAGACTGTACTTAATTTCTGTTGATAGGATTTTGTTTCTGTTAATGTGCACTACTCCCCTGGTTTGGTAGTTAATGACAAATGATGAAATTTAAACATGGGTATTTTTTTCAATTTTATAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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