SE3120307

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10904
  • Fragaria vesca
  • SE3120307
  • Mutator
  • FrvM6
  • LG3:4692373-4692560
  • TATACTCNG
  • TATATATAAGGTGATGCTATTAACTTCTTTTTTTTGTTATTAACGCGCCATATGTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNC        A    A          --T                       -  T  G   TTTTCTATCCACACATTTCAAATT  TT   AAACTTGTCATTTGTAT
                   TATATATA GGTG TGCTATTAAC   TCTTTTTTTTGTTATTAACGCGC CA AT TAT                        TA  TAC                 
                   |||||||| |||| ||||||||||   ||||||||||||||||||||||| || || |||                        ||  |||                  
                   ATATATAT CCAC ACGATAATTG   AGAAAAAAAACGATAATTGTGTG GT TA ATA                        TA  CTA                 
                  T        C    C          TAC                       A  -  G   -----------------------C  --   TCAGTTAGTACTTTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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