SE3150308

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10905
  • Fragaria vesca
  • SE3150308
  • PIF/harbinger
  • FrvP1
  • LG3:19109559-19109899
  • GTA
  • TAATTAAAGGGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
  G      AAG    AATT    -     ---- T  CCGTATGTGATACCTACATTTACAAATGTGACAACATATTTGTAGTCAAAGTGGTAATACTGAGTCGTATTATTTGTAATCTTGTTATAATAATTGTAATTACAAAATGTACAACCATTTTACAACCTTTTGAACAA
   TAATTA   GGGA    CTAT GGTAT    C AC                                                                                                                                         
   ||||||   ||||    |||| |||||    | ||                                                                                                                                         A
   ATTAAT   CTCT    GATA CATGA    A CA                                                                                                                                         
GAA      --G    GTTC    A     CCCT -  TATAGAATAAAAATAAAATGTATATGAACTTGTTTTTAATGTTACAATACTTAGTTTAATGTTGTAACTCTTGTTTAAATCGTTTAAATAAATGTGATAAATGTACTTCAATTTGTTTTAATGTTGATACTCTTGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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