SE3150312

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10909
  • Fragaria vesca
  • SE3150312
  • PIF/harbinger
  • FrvP27
  • LG5:18454213-18454696
  • TTC
  • GGCCTCGTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTC   C       --     TAGAAAATCATGGTATGAAAATGGAATTAGTTTCATTTCCCATTTTAATGTGTTGGTTGGTTGTAAATAAAGATTGAAAAGGAAACAAAAAATGAGATATGACTGGAAATTGACTCCCTCATAAAGCTTGAATTGAATTACCTAGTGAGAGGTGGTATTTTATTTCCATTCCCACCGTCAAAGATAAATTACATAAATTAGCCATCTAAAAAGTTTATTTTC
   GGC TCGTTTG  TATGG                                                                                                                                                                                                                              
   ||| |||||||  |||||                                                                                                                                                                                                                               
   CCG GGCAAAC  ATTGT                                                                                                                                                                                                                              
CTT   A       CA     ACTAACAGTTCTAACCTTTTACTAAATAAAAGGAAAGGTATGATTATACTTTACCTTTTTTCAAAATCATAAAGGTACATCTACAAACCAACTATAATATTAATTTAATCATTAAGTAAAAGTAAGAATAATGTGTTATAAATTATTCAGTATTATTACTTTAATTTTCGAAATTAAAGGTTATTGTGGGAAAATAATTAACGTATACACTATATAAATTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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