SE3120313

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10910
  • Fragaria vesca
  • SE3120313
  • Mutator
  • FrvM32
  • LG2:13605766-13606451
  • GAGGTTTGA
  • GAGAAATTTTAAACACACTCCCCTAATCTTTTAATACACACCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGGTTTGA             C    T        C                 A        TGTTTCTATTAAGATTTTATAGGTAAGCTAAATGACCAAAACAAACATCTATTATTAAAAAAAATATTCGCGCTAGAAATATTCTTTTCAATCTTCTACCCTAAAATCGTCGAAAACACGTCTTCTCCCCTAACCCCAACTCTTCTCCACAATTCATTTGGGTTGTCTTTTTTTTTTATATCTGTATCAACTTTATTTTGATCTTGCATATCATATTGTCATGTACTACATCTTTATCATGACATGTTTTATCAAATAACTAGCTAGCTATGTTTAGTAG
         GAGAAATTTTAAA ACAC CCCCTAAT TTTTAATACACACCTCT TTATTTTA                                                                                                                                                                                                                                                                                        
         ||||||||||||| |||| |||||||| ||||||||||||||||| ||||||||                                                                                                                                                                                                                                                                                         
         CTCTTTAAAATTT TGTG GGGGATTA AGAATTATGTGTGGGGA TGAATTAT                                                                                                                                                                                                                                                                                        
AGTTTGGAG             A    T        T                 A        GTGGTGGATAGTTCAAAAAGTAAAGTCATAATATGAATTATGTGTAGGGTTTGACGGATTTTACGAGAATTAAATACTTTATAAGATAATAAATTATATTAATTATATATACATGATAAACCACGGAGAAAAATGTATAATAAAGTAGATTAAAAACGTTCTTTAAAAACCGATAGTAGCAAGTTAAATATTAGTTTACTAATAACAATATAGGTTTGAGGTTTAGTGGTTATGTTCAAAAATTTTAAGTGTTTGATCATCTTGACATCTTTATGTCATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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