SE3120314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10911
  • Fragaria vesca
  • SE3120314
  • Mutator
  • FrvM58
  • LG7:7752465-7753263
  • TTGTTGTTT
  • GAGTGGTTTTAAATACACACCGTAAATAACTTAATACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGTTGTTT   T       A   CA    G                CATCCCTA       -   - TTTA     GATTTGATTGGTATGTTAAATGACCAAAAGAGACATGTGTAATACAATATAAATATTAAAAATAAACTTATATTTGGAAACTAATAATATGAAATATAAACCAAATTAAAATATTAAAAACGAAAACTTATTTTTGGAAACTTATAAAGTGAATTAGAACAAATTAAATTTTTAAGATTGAGAACTTATTTAGGGAAACTATTAAAGTAAACATAAAATTTGCAAGAAAATGGATAATCAATTCATTTCTTTTTTGTCCTTAAAGATTCATAATTTCCAAGTTTAAAGTGTCAAAGTGTCAAACGATGTAATTGTTATGCATATGAAC
         GAG GGTTTTA ATA  CACC TAAATAACTTAATACA        TTATTTG ATA T    AATCA                                                                                                                                                                                                                                                                                                                                        
         ||| ||||||| |||  |||| ||||||||||||||||        ||||||| ||| |    |||||                                                                                                                                                                                                                                                                                                                                         
         CTC TTAAAAT TAT  GTGG GTTTATTGAATTATGT        GGAAAAG GTT T    GTGGT                                                                                                                                                                                                                                                                                                                                        
TTTGTTGTT   T       A   AA    A                -----ATA       A   A ----     GAATAAATTAAAGAGTAAGCTTATAAAATGATTTATGTGTTGAGTTTCATGGATTTTATGAGAATTAGATTTTTAGGTACTTTATAGTATAATACACTGATATAATTGTGATAATAATAATAACATATTAATCATACATCAAAATATTTACTTGTAAAATATCTACAAGTATAGATAATGAATACAAGCATGTAAGAACTCTTTAGGAATGTTTAAGTAACAAGTAAAGTTTAAGAATTTGTACTTTTACTATTTGTTCTACTTTTTATGTATAAACTTATCACACAAACCCACTTTTCCTTTTATACACTTTATATTGCTTTATACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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