Plant MITE

SE3150316

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10913
Fragaria vesca
SE3150316
PIF/harbinger
FrvP28
LG2:16492131-16492344
TTA
AGGCTTAGTTTGGTATTGTGGTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT                  T     -----A      CAA -  TTAAAAAACTCAGTTTTAAATAAGCAACCCTCAACATGCTTTTTAAAATCGTGGTTATTTAAACTAA
  AGGCTTAGTTTGGTATTG GGTTT      AAAACT   T TT                                                                   
  |||||||||||||||||| |||||      ||||||   | ||                                                                    
  TCCGGGTCAAACCATAAC TCAAA      AATTTT   A TG                                                                   
AT                  -     ACCCTT      --- G  AATATTAGTAGTAAAATTTATATAAAAAACAAACCATTTTAGAATTTTGGACGAATAAATTTTGGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150316

TTAGGCTTAGTTTGGTATTGTGGTTTAAAAACTCAATTTTTAAAAAACTCAGTTTTAAATAAGCAACCCTCAACATGCTTTTTAAAATCGTGGTTATTTAAACTAAAAGGTTTTAAATAAGCAGGTTTTAAGATTTTACCAAACAAAAAATATATTTAAAATGATGATTATAAGTGATTTTAATTCCCAAAACTCAATACCAAACTGGGCCTTA

Copy Cancel