SE3130319

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10916
  • Fragaria vesca
  • SE3130319
  • hAT
  • Frvh43
  • LG5:22833276-22833643
  • GACCTAAA
  • CAGTGGCGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GACCTAAA   T        ------    --- T  AAA     GGGGGGCTAAGATATAGAACATGATAGTAGAATAAAACAATTTAATAAACTATACATCAATGAAAATAAATTACAAAATATCGCAGATTTAATTAATATTGTCGTATTTCCTTTTATAAATTAGGTATAATTAATACACATTAAG
        CAG GGCGGAGC      CAGA   A TT   CCTTA                                                                                                                                                 
        ||| ||||||||      ||||   | ||   |||||                                                                                                                                                 T
        GTC CCGCCTTG      TACG   C TT   CCCCA                                                                                                                                                 
AAATCCAG   C        ATGTAA    TTA -  ---     GACCTGGGGGGGATCGTAATAGTTAGAGGTGAATTAGTGGTATATTTGGAGGGTATTAACATCATTAAACCACATTTAAGTAAGTACTTTGGGGGGAATTAGTCATCGTTACAGTTGTTTTCTTGTTTTTTCTCTTTTATTGTTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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